RnoEX0069362 @ rn6
Exon Skipping
Gene
ENSRNOG00000023679 | Prdm5
Description
PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]
Coordinates
chr4:96767058-96812263:+
Coord C1 exon
chr4:96767058-96767151
Coord A exon
chr4:96787390-96787475
Coord C2 exon
chr4:96810025-96812263
Length
86 bp
Sequences
Splice sites
3' ss Seq
CATGGACACTTTATTTGTAGGTG
3' ss Score
6.83
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTCGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAG
Seq A exon
GTGAGCGTCCCTATCAATGCCCATACTGTGAAAAAGGATTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGG
Seq C2 exon
GAGAAGCCCTACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAGCACAAGAGGACGCACACAGGAGAAAAGCCTTTTCAGTGTGACGTGAGTTGGGTTCTTTTTTTCTTCCCTGGTATTCTGTGGTAAGCGCTGGGGATGTCTTGCTGCACATGCGTTTGATTTGTGTGTCTGTCAGTGCCTTGTGCTGCCCCATCTCTGGGTTGCATACTCTTTGCATTCATATTCTATTCATTATGGTTTCCTAGCAGCAAATAAATTGTGATTTCCTTCAGGATATCTTCCAGTATCTAATTCCATGGAGCTGTTCTTCCAGGGTGTAAATTTGGGAGAGTTTGAGGCAATTCAGTTAGGCCCAAGTCTTTGACAAGTTAGTGACAGCTGAACCAATAGGATGAATATGACTAAAATATAATGTATGTGTGCCAGAAGTTCTTTTTAAAATTAGAATATAAAACTATATTTAGCAAATCATAGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023679_MULTIEX1-10/10=9-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.069 C2=0.083
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(53.8=28.6),PF134651=zf-H2C2_2=WD(100=38.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGCCAGAAATTCGCCA
R:
AACCCAACTCACGTCACACTG
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]