DreEX0058023 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:1928061-1965131:-
Coord C1 exon
chr23:1965038-1965131
Coord A exon
chr23:1934808-1934893
Coord C2 exon
chr23:1928061-1928165
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTTCTATCTTTAGGTG
3' ss Score
11.19
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
ACCCACACAGGAGAGAAGGAGAAGATCTGTCCATACTGCGGCCAGAAGTTTGCCAGCAACGGCACTTTGAGAGTTCACATCCGCAGCCACACGG
Seq A exon
GTGAGCGGCCGTATCAGTGTCCCTACTGTGACAAAGCCTTCAGCAAGAACGACGGGCTAAAAATGCACATTCGCACACACACCCGG
Seq C2 exon
GAAAAGCCATATAAATGCAGCGAGTGCAACAAGGCCTTCAGTCAGAAGCGCGGGCTGGACGAGCACATGCGCACACACACCGGAGAGAAGCCCTTTCAGTGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.103 C2=0.171
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTGCGGCCAGAAGTTT
R:
CGCACTGAAAGGGCTTCTCTC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]