GgaEX1045916 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53697541-53721803:+
Coord C1 exon
chr4:53697541-53697634
Coord A exon
chr4:53710141-53710226
Coord C2 exon
chr4:53721699-53721803
Length
86 bp
Sequences
Splice sites
3' ss Seq
GATGCTTTCCTTATTTTCAGGTG
3' ss Score
11.22
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACTCACACAGGTGAAAAAGAAAAAATTTGCCCATATTGTGGACAGAAATTTGCAAGCAATGGAACACTGAGAGTTCATATTCGAAGCCATACAG
Seq A exon
GTGAGCGTCCTTACCAGTGTCCTTACTGTGACAAAGCTTTCAGCAAGAATGATGGACTGAAGATGCATATTCGCACCCACACAAGG
Seq C2 exon
GAAAAGCCATACCAATGTTCTGAGTGTAACAAGGCTTTCAGTCAAAAACGAGGCCTCGATGAGCACATGAGAACCCACACCGGAGAGAAGCCGTTTCAGTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'17-21,'17-19,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.103 C2=0.171
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
Main Skipping Isoform:
ENSGALT00000019510fB10923
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATTGTGGACAGAAATTTGCAAGC
R:
TCACACTGAAACGGCTTCTCT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]