MmuEX0036983 @ mm10
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65886085-65928021:+
Coord C1 exon
chr6:65886085-65886178
Coord A exon
chr6:65901774-65901859
Coord C2 exon
chr6:65927917-65928021
Length
86 bp
Sequences
Splice sites
3' ss Seq
GGCATTTTCTTTATTTGTAGGTG
3' ss Score
8.63
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTTGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAG
Seq A exon
GTGAGCGCCCCTATCAATGCCCGTACTGTGAAAAAGGTTTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGG
Seq C2 exon
GAGAAGCCCTACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAACACAAGAGGACACACACAGGAGAAAAGCCTTTTCAGTGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913_MULTIEX1-17/18=13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.103 A=0.136 C2=0.280
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(44.9=100),PF156161=TerY-C=FE(41.9=100),PF134651=zf-H2C2_2=PD(85.7=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF042167=FdhE=PD(21.7=51.7),PF156161=TerY-C=PD(35.1=89.7),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAAGGAGAAAGTCTGCCC
R:
CCTGTGTGTGTCCTCTTGTGT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types