MmuEX0036990 @ mm9

Exon Skipping

Gene

ENSMUSG00000029913 | Prdm5

Description

PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]

Coordinates

chr6:65781243-65836172:+

Coord C1 exon

chr6:65781243-65781365

Coord A exon

chr6:65833517-65833677

Coord C2 exon

chr6:65836079-65836172

Length

161 bp

Sequences

Splice sites

3' ss Seq

CTGTTGACTTGTATTCTAAGGTG

3' ss Score

6.87

5' ss Seq

AAGGTAAGT

5' ss Score

11

Exon sequences

Seq C1 exon

GTACGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGAAGAACCTGGCTGCCATTCAA

Seq A exon

GTGAGAGGACTTTTAAGTGTCACCACTGTGATGCCACATTTAAAAGGAAGGATACATTAAACGTTCATGTCCAGGTGGTCCATGAAAGACACAAGAAGTACCGATGTGAGCTGTGCAATAAGGCCTTTGTCACACCTTCAGTGCTTAGGAGTCATAAGAAG

Seq C2 exon

ACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTTGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029913_MULTIEX1-8/11=C1-9

Average complexity

C3

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.191 A=0.093 C2=0.117

Domain overlap (PFAM):

C1:

PF156161=TerY-C=PU(20.3=36.6),PF042167=FdhE=PU(30.4=51.2),PF134651=zf-H2C2_2=PU(4.8=2.4),PF102764=zf-CHCC=PU(5.0=2.4),PF132481=zf-ribbon_3=PU(0.1=0.0)

A:

PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1),PF102764=zf-CHCC=PU(0.1=0.0)

C2:

PF156161=TerY-C=FE(41.9=100),PF042167=FdhE=FE(44.9=100),PF134651=zf-H2C2_2=PD(85.7=56.2),PF102764=zf-CHCC=PD(85.0=53.1),PF132481=zf-ribbon_3=PD(88.9=50.0),PF134651=zf-H2C2_2=PU(38.5=31.2)

Main Inclusion Isoform:

ENSMUSP00000031976