BtaEX0028367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4640780-4728484:+
Coord C1 exon
chr6:4640780-4640873
Coord A exon
chr6:4644750-4644910
Coord C2 exon
chr6:4728380-4728484
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTTCATTTCTAAGGTG
3' ss Score
7.73
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACCCACTCGGAGGAGAGGCCATTCCAGTGCGAGGAGTGTAAAGCTCTCTTCCGGACTCCGTTTTCTTTGCAGAGACACCTGCTTATACATAACA
Seq A exon
GTGAGAGGACATTCAAGTGTCATCACTGTGATGCTACCTTTAAAAGAAAGGACACCTTGAATGTTCATGTCCAGGTGGTCCACGAAAGACACAAGAAGTACAGATGTGAGCTGTGTAATAAGGCATTTGTTACACCTTCAGTGCTTAGAAGTCATAAGAAA
Seq C2 exon
GAGAAGCCATACAAGTGCTCAGAGTGCGGCAAGGCCTTCAGCCAGAAGCGCGGCCTGGACGAGCACACGAGGACACACACCGGGGAGAAGCCTTTCCAGTGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX2-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.171
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
C2:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGGAGGAGAGGCCATTC
R:
GTCGCACTGGAAAGGCTTCTC
Band lengths:
195-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development