DreEX6078718 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:1965038-1991446:-
Coord C1 exon
chr23:1991353-1991446
Coord A exon
chr23:1977988-1978148
Coord C2 exon
chr23:1965038-1965131
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCAATCTTTTCTCTGTCCAGATG
3' ss Score
8.49
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ACTCATTCAGAGGAGAGGCCTTTCCAGTGTGAAGAGTGTAAGGCTCTGTTTCGTACCCCGTTCTCTTTACAGCGCCACCTCCTCATTCATAACA
Seq A exon
ATGAGAGGACGTTTAAGTGTGACCATTGTGACGCCACTTTCAAGCGTAAAGACACACTCAACGTGCACATTCAGGTGGTTCACGACGGACACAAGAAGTACAAGTGTGACCTGTGTGAGAAGGCCTTCGTCACGCCGTCTGTGCTCAAGAGCCACAAAAAG
Seq C2 exon
ACCCACACAGGAGAGAAGGAGAAGATCTGTCCATACTGCGGCCAGAAGTTTGCCAGCAACGGCACTTTGAGAGTTCACATCCGCAGCCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.062
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
C2:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGCCTTTCCAGTGTGA
R:
GCTGCGGATGTGAACTCTCAA
Band lengths:
170-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]