GgaEX6035033 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53695094-53697634:+
Coord C1 exon
chr4:53695094-53695187
Coord A exon
chr4:53696376-53696536
Coord C2 exon
chr4:53697541-53697634
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTCTACTTCATAAGGTG
3' ss Score
4.8
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ACCCATTCTGAAGAGAGACCATTCCAATGTGAGGAATGCAAAGCTTTGTTCCGAACCCCATTCTCTCTACAAAGACATCTACTAATTCATAACA
Seq A exon
GTGAGAGGACCTTCAAGTGTGATCACTGTGATGCTACTTTCAAAAGAAAAGACACCTTAAACGTTCATATTCAAGTTGTACATGATGGACATAAGAAATATAAGTGTGATCTCTGTGACAAAGCTTTTGTGACACCCTCAGTCCTGAAAAGTCATAAAAAA
Seq C2 exon
ACTCACACAGGTGAAAAAGAAAAAATTTGCCCATATTGTGGACAGAAATTTGCAAGCAATGGAACACTGAGAGTTCATATTCGAAGCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.046 C2=0.078
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(85.7=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
C2:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCATTCTGAAGAGAGACCA
R:
TGTATGGCTTCGAATATGAACTCTCA
Band lengths:
187-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]