HsaEX6086004 @ hg19
Exon Skipping
Gene
ENSG00000138738 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:9349]
Coordinates
chr4:121698343-121706246:-
Coord C1 exon
chr4:121706153-121706246
Coord A exon
chr4:121702298-121702458
Coord C2 exon
chr4:121698343-121698436
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCTTTGTTTCTAAGGTG
3' ss Score
9.76
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACCCACTCTGAGGAGAGACCGTTCCAATGTGAAGAATGTAAAGCTTTGTTCCGGACCCCATTTTCTTTACAGAGACACCTGCTAATACATAACA
Seq A exon
GTGAGAGGACTTTCAAGTGCCATCACTGCGATGCTACCTTTAAGAGGAAGGATACATTAAATGTTCATGTCCAGGTGGTTCATGAAAGACACAAGAAGTATAGGTGTGAGCTATGTAATAAGGCCTTTGTTACACCTTCAGTGCTTAGAAGTCATAAGAAA
Seq C2 exon
ACACATACAGGAGAAAAGGAGAAAATCTGTCCATATTGTGGCCAGAAATTTGCCAGCAGTGGTACACTCAGAGTTCATATCCGGAGCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138738-'22-23,'22-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.056
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1),PF102764=zf-CHCC=PU(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF102764=zf-CHCC=PD(89.5=53.1),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGAGAGACCGTTCCAA
R:
TGTGTGGCTCCGGATATGAAC
Band lengths:
181-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)