MmuEX0036984 @ mm9

Exon Skipping

Gene

ENSMUSG00000029913 | Prdm5

Description

PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]

Coordinates

chr6:65781243-65819259:+

Coord C1 exon

chr6:65781243-65781365

Coord A exon

chr6:65807637-65807811

Coord C2 exon

chr6:65819175-65819259

Length

175 bp

Sequences

Splice sites

3' ss Seq

CTGTGTTGTACATTGCACAGGTC

3' ss Score

6.42

5' ss Seq

ACAGTGCGT

5' ss Score

5.66

Exon sequences

Seq C1 exon

GTACGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGAAGAACCTGGCTGCCATTCAA

Seq A exon

GTCACCTTGGCTGTGAAGAGGACTTTGCCTGTCCACAGTGTGAATCGAGCTTTCCCAGTGAGGAAGTCCTTACTGAGCACCTTCAGAGCTTGCACCAGAAGCCCACAGGGGAGAAAGAGTTCAAATGCGAGAACTGCGGGAAGAAATTCCCTGTGAGGCAGGCCTTGCAGAGACA

Seq C2 exon

ATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGCTGAAGCGTCACATGATTACCCACTCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029913_MULTIEX1-2/11=C1-5

Average complexity

C3

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.191 A=0.141 C2=0.023

Domain overlap (PFAM):

C1:

PF156161=TerY-C=PU(20.3=36.6),PF042167=FdhE=PU(30.4=51.2),PF134651=zf-H2C2_2=PU(4.8=2.4),PF102764=zf-CHCC=PU(5.0=2.4),PF132481=zf-ribbon_3=PU(0.1=0.0)

A:

PF089965=zf-DNA_Pol=PU(55.6=93.2),PF134651=zf-H2C2_2=WD(100=49.2),PF097235=Zn-ribbon_8=PU(57.6=32.2)

C2:

PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)

Main Inclusion Isoform:

ENSMUSP00000031976