BtaEX0028365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4604036-4608086:+
Coord C1 exon
chr6:4604036-4604210
Coord A exon
chr6:4606323-4606497
Coord C2 exon
chr6:4607965-4608086
Length
175 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTTGTAAATATGCAGATC
3' ss Score
5.23
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GAAGGAGAAAACATTTTCTATTTGGCAATTGAAGATATAGAAACAGATACAGAGCTTCTGATTGGCTACCTGGACAGTGACATGGAGGCCGATGAAGAAGAACAGCAAATTATGACAATGATCAATGAAGAGGAAGGTAAAAATTCTAAAGGACAATCAACAGCTAGCAGAAAAG
Seq A exon
ATCGCTTTGGCTGTAAAGAGGACTATGCCTGTCCCTACTGTGAATCGAGTTTTACCAGTGAGGAAATTCTTGCCGAGCATCTTCAGACATTGCACCAGAAACCCACAGAGGAGAAAGAATATAAGTGCAAGAGCTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACA
Seq C2 exon
TTTTGAACAGCACCAGGAGACGTGCCAGGGAGATGCCAGGTTTGTGTGTAAGGCAGACAGCTGTGGGAAGAGGCTGAAGAGCAAGGAAGCCCTGAGGAGACACCAGGAGAACGTCCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX1-4/5=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.085 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=PU(88.1=88.1)
C2:
PF128742=zf-met=PD(28.6=14.3),PF138941=zf-C2H2_4=WD(100=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTCTGATTGGCTACCTGG
R:
GTGGACGTTCTCCTGGTGTCT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development