HsaEX0049959 @ hg19

Exon Skipping

Gene

ENSG00000138738 | PRDM5

Description

PR domain containing 5 [Source:HGNC Symbol;Acc:9349]

Coordinates

chr4:121732525-121742500:-

Coord C1 exon

chr4:121742326-121742500

Coord A exon

chr4:121739508-121739682

Coord C2 exon

chr4:121732525-121732604

Length

175 bp

Sequences

Splice sites

3' ss Seq

GTTTCCTTGTGAATGTGCAGATC

3' ss Score

6.92

5' ss Seq

ACAGTGCGT

5' ss Score

5.66

Exon sequences

Seq C1 exon

GAAGGAGAAAACATTTTCTATTTGGCAGTTGAAGATATAGAAACAGACACGGAGCTTCTGATTGGCTACCTGGATAGTGACATGGAGGCTGAGGAGGAAGAACAGCAAATTATGACAGTCATCAAAGAAGGGGAAGTTGAAAATTCTAGAAGACAATCAACAGCGGGCAGAAAAG

Seq A exon

ATCGCCTTGGCTGTAAAGAGGACTATGCTTGTCCTCAATGTGAATCGAGTTTTACCAGTGAGGATATTCTTGCTGAGCATCTCCAGACATTGCACCAGAAACCCACAGAGGAGAAAGAATTTAAGTGCAAGAACTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACA

Seq C2 exon

GAGATCCTAAGAAAAAGCTTATATGTTCAGTGTGCAATAAAAAGTGTTCTTCAGCATCAAGCCTACAGGAACATAGAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000138738_MULTIEX2-5/9=4-9

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.468 A=0.073 C2=0.000

Domain overlap (PFAM):

C1:

PF100834=DUF2321=PU(0.1=0.0)

A:

PF100834=DUF2321=FE(69.9=100),PF138941=zf-C2H2_4=WD(100=40.7),PF047079=PRELI=PU(54.7=88.1),PF0396611=Trm112p=WD(100=81.4),PF0009621=zf-C2H2=PU(78.3=30.5)

C2:

PF128742=zf-met=PU(87.0=74.1),PF144711=DUF4428=PU(38.0=70.4)

Main Inclusion Isoform:

ENSP00000264808