MmuEX0036984 @ mm10
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65855949-65869265:+
Coord C1 exon
chr6:65855949-65856123
Coord A exon
chr6:65857643-65857817
Coord C2 exon
chr6:65869181-65869265
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGTACATTGCACAGGTC
3' ss Score
6.42
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GAAGGAGAAAATATTTTCTACTTGGCAGTTGATGATATAGAAACAGATACAGAGCTTTTGATTGGCTACCTGGACAGTGATGTGGAGGCAGAGGAGGAGGAGCAACAAGCTCTGACCATGACCAAAGAAGGCAAAGTTGACCACTCTAAGGGACAGTTGGCAGCTGGAAGTAAAG
Seq A exon
GTCACCTTGGCTGTGAAGAGGACTTTGCCTGTCCACAGTGTGAATCGAGCTTTCCCAGTGAGGAAGTCCTTACTGAGCACCTTCAGAGCTTGCACCAGAAGCCCACAGGGGAGAAAGAGTTCAAATGCGAGAACTGCGGGAAGAAATTCCCTGTGAGGCAGGCCTTGCAGAGACA
Seq C2 exon
ATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGCTGAAGCGTCACATGATTACCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913_MULTIEX1-5/18=3-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.439 A=0.140 C2=0.029
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(33.5=100)
A:
PF134651=zf-H2C2_2=WD(100=49.2)
C2:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
ENSMUST00000031976fB3162
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTTGGCAGTTGATGATATAGA
R:
TGAGTGGGTAATCATGTGACGC
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types