GgaEX6035038 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53673267-53677324:+
Coord C1 exon
chr4:53673267-53673450
Coord A exon
chr4:53675886-53676060
Coord C2 exon
chr4:53677232-53677324
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCCAATCATTCAGATC
3' ss Score
8.26
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GAAGGCGAAAATATTTTCTATCTTGCTGTGGACGATATTGAAACAGACACAGAACTTCTGATTGGTTACTTGGACAGTGACATGGAAGAAGAGGAGGAGGATGAGGAGGAAGTAACTGTTATCCAGGAAGATGAAGACAGTGGCAACAATAAAGAGGTGCAACTAGCTGGTGAAAAAGTTGCAG
Seq A exon
ATCCCCTCACTTGTAAAGAGGACCATGCATGCCCAAACTGTGAGTCCAGTTTTGCAAGCCAGGAGATTCTAGCTGAACATCTTCAGACATTGCACCAAAAACCCAGTGAGGAAAAAGAATTCAAGTGCCGAAACTGTGGAAAGAAATTCCCTGTTAAACAAGCTCTACAAAGACA
Seq C2 exon
TGTACTTCAGTGCACAGAGAATATCAACCCAGGAGACTCTTCAAGAAGTTTTCAGTGTTCTGTTTGCAATACTTCCTTCAGCTCAGAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0396611=Trm112p=PU(29.9=37.1)
A:
PF0396611=Trm112p=PD(68.8=89.8),PF0009621=zf-C2H2=PU(78.3=30.5)
C2:
PF0009621=zf-C2H2=PD(17.4=12.5),PF128742=zf-met=PU(66.7=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGGACGATATTGAAACAGA
R:
TCGATTCTGAGCTGAAGGAAGT
Band lengths:
253-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]