MmuEX0036982 @ mm10
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65831249-65869265:+
Coord C1 exon
chr6:65831249-65831371
Coord A exon
chr6:65855949-65856123
Coord C2 exon
chr6:65869181-65869265
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAACTTTATTCCAGGAA
3' ss Score
9.49
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGAAGAACCTGGCTGCCATTCAA
Seq A exon
GAAGGAGAAAATATTTTCTACTTGGCAGTTGATGATATAGAAACAGATACAGAGCTTTTGATTGGCTACCTGGACAGTGATGTGGAGGCAGAGGAGGAGGAGCAACAAGCTCTGACCATGACCAAAGAAGGCAAAGTTGACCACTCTAAGGGACAGTTGGCAGCTGGAAGTAAAG
Seq C2 exon
ATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGCTGAAGCGTCACATGATTACCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913_MULTIEX1-3/18=2-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.193 A=0.439 C2=0.029
Domain overlap (PFAM):
C1:
PF042167=FdhE=PU(30.4=51.2),PF156161=TerY-C=PU(20.3=36.6),PF134651=zf-H2C2_2=PU(4.8=2.4)
A:
PF0085623=SET=FE(33.5=100)
C2:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCAAGGGAGAAGTTCT
R:
TGAGTGGGTAATCATGTGACGC
Band lengths:
202-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types