BtaEX0028364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4569714-4608086:+
Coord C1 exon
chr6:4569714-4569836
Coord A exon
chr6:4604036-4604210
Coord C2 exon
chr6:4607965-4608086
Length
175 bp
Sequences
Splice sites
3' ss Seq
TATTTTTAATTTTGTCTTAGGAA
3' ss Score
8.14
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTTCGGGGGAGTAAGGGAGAAGTCCTGTACATTTTGGACGCTACCAACCCGCGACACTCCAACTGGCTTCGCTTTGTTCATGAGGCACCATCTCAGGAGCAGAAGAACCTGGCTGCCATCCAG
Seq A exon
GAAGGAGAAAACATTTTCTATTTGGCAATTGAAGATATAGAAACAGATACAGAGCTTCTGATTGGCTACCTGGACAGTGACATGGAGGCCGATGAAGAAGAACAGCAAATTATGACAATGATCAATGAAGAGGAAGGTAAAAATTCTAAAGGACAATCAACAGCTAGCAGAAAAG
Seq C2 exon
TTTTGAACAGCACCAGGAGACGTGCCAGGGAGATGCCAGGTTTGTGTGTAAGGCAGACAGCTGTGGGAAGAGGCTGAAGAGCAAGGAAGCCCTGAGGAGACACCAGGAGAACGTCCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX1-3/5=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.475 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=PD(28.6=14.3),PF138941=zf-C2H2_4=WD(100=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGGGGAGTAAGGGAGAA
R:
TGTGGACGTTCTCCTGGTGTC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development