DreEX6078714 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:2011576-2020843:-
Coord C1 exon
chr23:2020721-2020843
Coord A exon
chr23:2015026-2015200
Coord C2 exon
chr23:2011576-2011753
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTCACAGGAT
3' ss Score
10.48
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTCGAGGGAATAAAGGTGATGTGCTGTATATCCTGGATGCTAGTAACCCTCGTCATGCTAACTGGCTTCGCTTCGTCCATCAGGCCCCTTCACAGGAGCAGAAGAACCTGGCCGCAATCCAG
Seq A exon
GATGGAGAGAATATCTTTTATCTGGCGGTTGATGACATCGAGACGGACACGGAGCTGCTGATTGGTTACCTGGACAGTGATATGGAGGAGGAAGAGGAGGATCTGGAGGAAGAGCAGGACATCAAAGATGAAGACGAGAACAGTAAAGACAGCAAACAACTCAGTGCAGACACAG
Seq C2 exon
AGCTGATGATCAAAAAGGAGGATTACCCATGTCTGCTGTGCGAGAGCAGCTTCCCCAGTGAAGACGTGCTAGCAGAGCATCTCCAGAGCCTCCACAACAGAGGAAGTGCTGAAGACAAAGAGTTTAAGTGTCGATCCTGCGGAAAAGAGTTTCCCGTCAGACAAGCCCTGCAGCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.627 C2=0.067
Domain overlap (PFAM):
C1:
PF0389611=TRAP_alpha=PU(4.3=14.6)
A:
PF0389611=TRAP_alpha=FE(41.7=100)
C2:
PF0389611=TRAP_alpha=FE(42.4=100),PF138941=zf-C2H2_4=WD(100=40.0),PF097235=Zn-ribbon_8=PU(59.4=31.7),PF0009621=zf-C2H2=PU(78.3=30.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTCATGCTAACTGGCTT
R:
GGCTTGTCTGACGGGAAACTC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]