GgaEX1045917 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55788842-55802365:+
Coord C1 exon
chr4:55788842-55788964
Coord A exon
chr4:55799572-55799755
Coord C2 exon
chr4:55802191-55802365
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTACTTATGGTTTGCAACAGGAA
3' ss Score
7.52
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTCGTGGCAGTAAAGGTGAAGTCCTTTATATCCTGGATGCAAGCAATCCACGCCATTCTAATTGGCTGCGTTTTGTCCATGAAGCTCCATCCCAGGAACAAAAGAATCTGGCTGCAATCCAG
Seq A exon
GAAGGCGAAAATATTTTCTATCTTGCTGTGGACGATATTGAAACAGACACAGAACTTCTGATTGGTTACTTGGACAGTGACATGGAAGAAGAGGAGGAGGATGAGGAGGAAGTAACTGTTATCCAGGAAGATGAAGACAGTGGCAACAATAAAGAGGTGCAACTAGCTGGTGAAAAAGTTGCAG
Seq C2 exon
ATCCCCTCACTTGTAAAGAGGACCATGCATGCCCAAACTGTGAGTCCAGTTTTGCAAGCCAGGAGATTCTAGCTGAACATCTTCAGACATTGCACCAAAAACCCAGTGAGGAAAAAGAATTCAAGTGCCGAAACTGTGGAAAGAAATTCCCTGTTAAACAAGCTCTACAAAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.565 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
PF0396611=Trm112p=PU(28.0=33.9)
C2:
PF0396611=Trm112p=PD(70.7=89.8),PF0009621=zf-C2H2=PU(78.3=30.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTAAAGGTGAAGTCCT
R:
TCCACAGTTTCGGCACTTGAA
Band lengths:
258-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]