MmuEX0036986 @ mm9
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65781243-65819259:+
Coord C1 exon
chr6:65781243-65781365
Coord A exon
chr6:65812909-65812988
Coord C2 exon
chr6:65819175-65819259
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCATCCCTGTCCTAGGTG
3' ss Score
10.17
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTACGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGAAGAACCTGGCTGCCATTCAA
Seq A exon
GTGATCCTAAGAGAAAACTCATATGCTCGGTGTGCAATAGAAAATGTACCTCAGTGTCAAGCCTGCAGGAGCACAGGAAG
Seq C2 exon
ATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGCTGAAGCGTCACATGATTACCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913_MULTIEX1-4/11=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.191 A=0.018 C2=0.023
Domain overlap (PFAM):
C1:
PF156161=TerY-C=PU(20.3=36.6),PF042167=FdhE=PU(30.4=51.2),PF134651=zf-H2C2_2=PU(4.8=2.4),PF102764=zf-CHCC=PU(5.0=2.4),PF132481=zf-ribbon_3=PU(0.1=0.0)
A:
PF128742=zf-met=PU(87.0=74.1),PF144711=DUF4428=PU(38.0=70.4)
C2:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCAACCCAAGACACTCC
R:
TGAGTGGGTAATCATGTGACGC
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types