GgaEX6035036 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55803891-55813316:+
Coord C1 exon
chr4:55803891-55804012
Coord A exon
chr4:55807754-55807833
Coord C2 exon
chr4:55813232-55813316
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTATTTTGTTTCTGTTTCAGGAA
3' ss Score
11.98
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTATGAACAGCACAAGGAGGCATGCAGAGGGGATGCCAGATTCATATGCAAGGCAGATAGCTGCGGGAAGAGGTTCAAGAGTAAGGATGCCCTGAAAAAACATAAGGAAAATGTTCATAGTG
Seq A exon
GAAATTCTAGGAAAAAGCTGACGTGTTCAGTGTGCAATAAGAAATGTTCCTCAACAACAAATCTCCAGGAGCATCGAAAG
Seq C2 exon
GTTCATGAGACCTTTGAGTGTCAGGAATGTGACAAGAGATTTATTTCAGCTAACCAGCTAAAACGCCATATGATAACTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.012 C2=0.052
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(28.6=14.3),PF0009621=zf-C2H2=WD(100=61.9)
A:
PF128742=zf-met=WD(100=77.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAGGGGATGCCAGATT
R:
TCATATGGCGTTTTAGCTGGT
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]