BtaEX0028370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4607965-4622512:+
Coord C1 exon
chr6:4607965-4608086
Coord A exon
chr6:4613367-4613446
Coord C2 exon
chr6:4622428-4622512
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCATTTGTGTTTTTCTTTAGGGG
3' ss Score
11.36
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTTTGAACAGCACCAGGAGACGTGCCAGGGAGATGCCAGGTTTGTGTGTAAGGCAGACAGCTGTGGGAAGAGGCTGAAGAGCAAGGAAGCCCTGAGGAGACACCAGGAGAACGTCCACACCG
Seq A exon
GGGATCCTAAGAAAAAACTCATATGTTCAGTGTGCAATAAAAAGTGTTCTTCAGCATCAAGCCTACAGGAGCATAGGAAG
Seq C2 exon
ATTCATGAAATATTTGATTGTCAAGAATGTATGAAGAAATTCATTTCAGCTAATCAGCTAAAGCGTCATATGATCACCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(28.6=14.3),PF138941=zf-C2H2_4=WD(100=61.9)
A:
PF128742=zf-met=PU(87.0=74.1),PF144711=DUF4428=PU(38.0=70.4)
C2:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCCAGGTTTGTGTGT
R:
TGAGTGGGTGATCATATGACGC
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development