DreEX0058027 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:1995510-2011033:-
Coord C1 exon
chr23:2010912-2011033
Coord A exon
chr23:2007897-2007976
Coord C2 exon
chr23:1995510-1995594
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGTG
3' ss Score
9.9
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTTCCTGCAGCATAAAGAGGCGTGTAAAGGAGACGAACGCTTCATCTGTAAGGCGGAGAGCTGTGGGAAGAGATTCAAGAGTAAAGACGCACTCAAGAAACACAAAGGCAACATCCATATAG
Seq A exon
GTGGTGCTCGCAGGAAGTTGGTGTGCACCATCTGTAATAAGAAGTGCTCATCCTCACTCAACCTGCAGGAGCACCGCAAG
Seq C2 exon
GTTCATGAGGTGTTTGACTGCGACGCCTGTGATAAAAAGTTCATCTCCACCAATCAGCTGAAGAGACACATGATCACACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=61.9)
A:
PF128742=zf-met=WD(100=77.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCAGCATAAAGAGGCG
R:
TCAGCTGATTGGTGGAGATGA
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]