RnoEX0069365 @ rn6
Exon Skipping
Gene
ENSRNOG00000023679 | Prdm5
Description
PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]
Coordinates
chr4:96716448-96744304:+
Coord C1 exon
chr4:96716448-96716570
Coord A exon
chr4:96739878-96739957
Coord C2 exon
chr4:96744220-96744304
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCATCCCTGTCCTAGGTG
3' ss Score
10.17
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTGCGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCGAGACACTCCAACTGGCTTCGCTTTGTACATGAGGCACCATCTCAGGAGCGGAAGAATCTGGCTGCAATTCAA
Seq A exon
GTGATCCTAAGAGAAAGCTCATATGCTCGGTGTGCAATAGAAGGTGCACCTCATTGTCGAGCCTGCAGGAGCACAGGAAG
Seq C2 exon
ATTCATGAGATATTTGATTGCCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGCTGAAACGTCACATGATTACCCATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023679_MULTIEX1-4/10=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
PF128742=zf-met=PU(87.0=74.1)
C2:
PF128742=zf-met=PD(4.3=3.4),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCAACCCGAGACACTCCA
R:
CCGAATGGGTAATCATGTGACGT
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]