MmuEX0036988 @ mm9

Exon Skipping

Gene

ENSMUSG00000029913 | Prdm5

Description

PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]

Coordinates

chr6:65781243-65831136:+

Coord C1 exon

chr6:65781243-65781365

Coord A exon

chr6:65820306-65820463

Coord C2 exon

chr6:65831043-65831136

Length

158 bp

Sequences

Splice sites

3' ss Seq

TCTCTGCTCATTCTTCCTAGAAA

3' ss Score

8.47

5' ss Seq

AAGGTAAAG

5' ss Score

9.06

Exon sequences

Seq C1 exon

GTACGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGAAGAACCTGGCTGCCATTCAA

Seq A exon

AAAAGCGGCCTTATAACTGTGAGATCTGTAACAAGTCCTTCAAGAGGCTCGATCAAGTGGGCGCCCACAAAGTGATCCACAGTGAGGACAAACCCTACCAGTGCAAGCTCTGTGGCAAGGGCTTTGCTCACAGAAACGTTTACAAGAACCACAAGAAG

Seq C2 exon

ACCCACTCCGAGGAGAGACCTTTCCAGTGTGATGCATGTAAAGCCTTGTTCCGCACGCCCTTTTCTCTGCAGAGACACCTGTTAATCCACAACA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029913_MULTIEX1-6/11=C1-7

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.191 A=0.038 C2=0.000

Domain overlap (PFAM):

C1:

PF156161=TerY-C=PU(20.3=36.6),PF042167=FdhE=PU(30.4=51.2),PF134651=zf-H2C2_2=PU(4.8=2.4),PF102764=zf-CHCC=PU(5.0=2.4),PF132481=zf-ribbon_3=PU(0.1=0.0)

A:

PF144711=DUF4428=PD(2.0=1.9),PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)

C2:

PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)

Main Inclusion Isoform:

ENSMUSP00000031976