BtaEX0028372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4622428-4640873:+
Coord C1 exon
chr6:4622428-4622512
Coord A exon
chr6:4624015-4624172
Coord C2 exon
chr6:4640780-4640873
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTACAGAAA
3' ss Score
11.69
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATTCATGAAATATTTGATTGTCAAGAATGTATGAAGAAATTCATTTCAGCTAATCAGCTAAAGCGTCATATGATCACCCACTCAG
Seq A exon
AAAAACGACCCTATAATTGTGAGATTTGTAATAAATCTTTCAAGAGGCTTGACCAAGTGGGTGCCCACAAAGTGATACACAGTGAAGATAAACCTTACAAGTGCAAGCTCTGTGGAAAGGGGTTTGCTCACAGAAATGTTTACAAGAATCACAAGAAG
Seq C2 exon
ACCCACTCGGAGGAGAGGCCATTCCAGTGCGAGGAGTGTAAAGCTCTCTTCCGGACTCCGTTTTCTTTGCAGAGACACCTGCTTATACATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(4.3=3.4),PF144711=DUF4428=FE(56.0=100),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF144711=DUF4428=PD(2.0=1.9),PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
C2:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAATTCATTTCAGCTAATCAGC
R:
TGTTATGTATAAGCAGGTGTCTCTG
Band lengths:
147-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development