GgaEX0017948 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55813232-55819930:+
Coord C1 exon
chr4:55813232-55813316
Coord A exon
chr4:55814599-55814756
Coord C2 exon
chr4:55819839-55819930
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCCCCACTCATTTTCTGCAGAAA
3' ss Score
10.02
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTCATGAGACCTTTGAGTGTCAGGAATGTGACAAGAGATTTATTTCAGCTAACCAGCTAAAACGCCATATGATAACTCATTCAG
Seq A exon
AAAAACGCCCCTACACCTGCGAGGTTTGCAATAAGTCCTTCAAACGACTTGATCAAGTGACTGCACACAAAATAATACACAGTGAAGATAAACCTTATAAATGCAAGCTTTGTGGAAAGGGATTTGCCCACAGAAATGTTTACAAGAATCACAAGAAG
Seq C2 exon
AACAGGTACAGCACAGACATCAGCACTGCGAGCTTCCCCACAGTGTCTCGTCAATATGTCTCAACCCTGTTCTGGAGGAACCACCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'10-11,'10-9,11-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.019 C2=0.032
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCTTTGAGTGTCAGGA
R:
CTCAACAGGTGGTTCCTCCA
Band lengths:
172-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]