GgaEX0017949 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55814599-55821924:+
Coord C1 exon
chr4:55814599-55814756
Coord A exon
chr4:55819839-55819930
Coord C2 exon
chr4:55821831-55821924
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCCTTCTATTTATCCACAGAAC
3' ss Score
11.3
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAAAACGCCCCTACACCTGCGAGGTTTGCAATAAGTCCTTCAAACGACTTGATCAAGTGACTGCACACAAAATAATACACAGTGAAGATAAACCTTATAAATGCAAGCTTTGTGGAAAGGGATTTGCCCACAGAAATGTTTACAAGAATCACAAGAAG
Seq A exon
AACAGGTACAGCACAGACATCAGCACTGCGAGCTTCCCCACAGTGTCTCGTCAATATGTCTCAACCCTGTTCTGGAGGAACCACCTGTTGAG
Seq C2 exon
ACCCATTCTGAAGAGAGACCATTCCAATGTGAGGAATGCAAAGCTTTGTTCCGAACCCCATTCTCTCTACAAAGACATCTACTAATTCATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'11-12,'11-11,12-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
A:
NO
C2:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACGCCCCTACACCTGC
R:
TGGTCTCTCTTCAGAATGGGT
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]