GgaEX0017949 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53686928-53695187:+
Coord C1 exon
chr4:53686928-53687012
Coord A exon
chr4:53693535-53693626
Coord C2 exon
chr4:53695094-53695187
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCCTTCTATTTATCCACAGAAC
3' ss Score
11.3
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTCATGAGACCTTTGAGTGTCAGGAATGTGACAAGAGATTTATTTCAGCTAACCAGCTAAAACGCCATATGATAACTCATTCAG
Seq A exon
AACAGGTACAGCACAGACATCAGCACTGCGAGCTTCCCCACAGTGTCTCGTCAATATGTCTCAACCCTGTTCTGGAGGAACCACCTGTTGAG
Seq C2 exon
ACCCATTCTGAAGAGAGACCATTCCAATGTGAGGAATGCAAAGCTTTGTTCCGAACCCCATTCTCTCTACAAAGACATCTACTAATTCATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PU(75.8=86.2)
A:
PF121713=zf-C2H2_jaz=PD(21.2=22.6),PF134651=zf-H2C2_2=PU(4.8=3.2)
C2:
PF134651=zf-H2C2_2=PD(85.7=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGAGACCTTTGAGTGTCAGG
R:
AGTAGATGTCTTTGTAGAGAGAATGG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]