MmuEX0036976 @ mm9
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65809351-65812988:+
Coord C1 exon
chr6:65809351-65809472
Coord A exon
chr6:65811082-65811133
Coord C2 exon
chr6:65812909-65812988
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTCTCCTTAAAGTAG
3' ss Score
6.28
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTTTGAGCAGCACCGGAAGGCTTGCCGAGGGGAGGCCAGGTTTGTGTGCAAAGCCGACAGCTGCGGGAAGAGGCTGAAAAGCAAGGATGCCCTGCGAAGGCACCAGGAAAATGTCCACACCG
Seq A exon
TAGGGATGATGGGGAGAATACTTCCTGTTAGAGCCAGGAGAGCACCACTAAG
Seq C2 exon
GTGATCCTAAGAGAAAACTCATATGCTCGGTGTGCAATAGAAAATGTACCTCAGTGTCAAGCCTGCAGGAGCACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913-'14-9,'14-8,15-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.214 A=0.889 C2=0.018
Domain overlap (PFAM):
C1:
PF089965=zf-DNA_Pol=FE(41.4=100),PF097235=Zn-ribbon_8=PD(39.4=31.0),PF0009621=zf-C2H2=WD(100=61.9)
A:
PF089965=zf-DNA_Pol=PD(2.0=11.1)
C2:
PF128742=zf-met=PU(87.0=74.1),PF144711=DUF4428=PU(38.0=70.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGTGCAAAGCCGACAG
R:
CAGGCTTGACACTGAGGTACA
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types