MmuEX0036980 @ mm9
Exon Skipping
Gene
ENSMUSG00000029913 | Prdm5
Description
PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]
Coordinates
chr6:65805943-65807811:+
Coord C1 exon
chr6:65805943-65806167
Coord A exon
chr6:65806850-65807059
Coord C2 exon
chr6:65807637-65807811
Length
210 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTTCCTTATTTACAGAAG
3' ss Score
9.47
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GAAGGAGAAAATATTTTCTACTTGGCAGTTGATGATATAGAAACAGATACAGAGCTTTTGATTGGCTACCTGGACAGTGATGTGGAGGCAGAGGAGGAGGAGCAACAAGCTCTGACCATGACCAAAGAAGGCAAAGTTGACCACTCTAAGGGACAGTTGGCAGCTGGAAGTAAAGGTACTGCATCTTCGTTTGGTGATCTGAAGGAAGAGACATTGAAGAGGAAG
Seq A exon
AAGTTAAACATACAAGACACAAACGTGACCCCAGCAAGAGAAATGAAGACATCAGTCACATGTTTACCAGTGTAGTGTTTGATTACATGAATGTGGCACCTTAAATATGTGAATGACTGAGTTAGAAATGGGGAAAAGAGCCGTATGGGAGAGTGCACCTGAGATTTACTGCAGACATTGCACTTCACAGATGGAACACATATGGCTTTG
Seq C2 exon
GTCACCTTGGCTGTGAAGAGGACTTTGCCTGTCCACAGTGTGAATCGAGCTTTCCCAGTGAGGAAGTCCTTACTGAGCACCTTCAGAGCTTGCACCAGAAGCCCACAGGGGAGAAAGAGTTCAAATGCGAGAACTGCGGGAAGAAATTCCCTGTGAGGCAGGCCTTGCAGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029913-'9-6,'9-5,10-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.471 C2=0.141
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(33.5=100)
A:
PF0085623=SET=PD(19.1=94.3)
C2:
PF089965=zf-DNA_Pol=PU(55.6=93.2),PF134651=zf-H2C2_2=WD(100=49.2),PF097235=Zn-ribbon_8=PU(57.6=32.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACCTGGACAGTGATGT
R:
CCGCAGTTCTCGCATTTGAAC
Band lengths:
302-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: