MmuEX0037006 @ mm10
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15563221-15564340:-
Coord C1 exon
chr17:15564236-15564340
Coord A exon
chr17:15563737-15563898
Coord C2 exon
chr17:15563221-15563331
Length
162 bp
Sequences
Splice sites
3' ss Seq
TAAATGCTCTCGTCCCGCAGGAC
3' ss Score
10.25
5' ss Seq
GAGGTCCCC
5' ss Score
-1.9
Exon sequences
Seq C1 exon
CTCCTCAGAGGGACGAACGCCGGCGGTGGCCTCAGAGCCGCGGGATTCTGGACCATGAGTGCAGGCGAAACCTTCAGGACCAGCGAGGCTTTCTAGGCTCAGCCC
Seq A exon
GACCCTAAATACCTCCGACGTGACAAATCCCAACTCTTCGTGACATAATCGTCAAATCTCGTCAGACTGCGAGTCTCCAAACCTTATTTCACAGCCTGAAAGACTCCTCTAGCCTACGAACCCAATTCCTTCAATCTGATGCACCCCACTCCTCAGCCCGAG
Seq C2 exon
GACCATAGGACCCTGGACCTCTCCAGTGAAATGTCCTGCACCATGAACACCAACAAGCTGGAAGAAAATAGTCCTGAAGAAGATACAGGGAAATTCGAGTGGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.815
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGAGGGACGAACGC
R:
TGGGTTTCCACTCGAATTTCCC
Band lengths:
214-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types