MmuEX0037453 @ mm9
Exon Skipping
Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine, 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110717797-110720503:+
Coord C1 exon
chr9:110717797-110718056
Coord A exon
chr9:110718921-110719075
Coord C2 exon
chr9:110719593-110720503
Length
155 bp
Sequences
Splice sites
3' ss Seq
CAAAAATTTTCTCTGTGTAGGTA
3' ss Score
8.3
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACATCTGGATTATGCAGTGTTCATGGGAGATGCTGACTTGTGGTCCAAAAGGCCAGTCAGGATTCCAGTCCAGGACATCATCGTTCACCAGGATTTCTCCATGATGAGAACAGTTGTTCATGACATCGCCCTTGTTCTGCTGGCCTTCCCTGTGAATTACAGCGTCAACATCCAGCCCGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCTGGGACGCTATGCTGGGTGACCGGATGGGGCAAAGTACTTGAACAAG
Seq A exon
GTAGGTCGTCGAGAATACTGCAGGAGATTGAGCTGAATATTATCCGTCATGAGAAATGTAACCAGATTCTCAAGGACATCATGGGGAATATATTTACCCTGGTCCAGGAAGGGGGAGTCTGTGGCTATAATGAGAAAGGAGGAGATGCCTGCCAG
Seq C2 exon
GGAGATTCTGGGGGCCCCCTGGTCTGCGAATTTAATAAAACGTGGGTGCAGGTAGGGATCGTGAGCTGGGGTCTTGGCTGTGGCCGAATTGGATACCCTGGAGTTTATACAGAAGTGAGTTACTACAGAGACTGGATCATTAAAGAACTGAGTCGGGCTTCGTGTTGGAAGCTATCAGGCTTCCTCGTCTTAAGCGTGTGTCTGGTGCTTCACCTGGCCATCGTGGTGGCCCTATGATCCCCACAGCCCATGGTCCTCTTGTTTCTGAGCCTTCACTAGCTTCTCCCCTGACCGGATTTCCCCACCAATGCTTTCTTCAAATTCTACTTGGGATTGCTTGCCTTAGTGGAGCAGGAACACTGGAGGGAGTTTGGGGCTTGTAAGCATGTCCCGCCCTGGTGCTCTTTGTCATCTGCCTCAGATACCACTGTACTAAGGCTGTGCTTTACCTGGAGTGAAGGATTGTGGCCCACTTCCCGATAGAGGACTATCTGGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(44.6=98.8)
A:
PF0008921=Trypsin=FE(28.8=100)
C2:
PF0008921=Trypsin=PD(19.7=57.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACCTGGGACGCTATGC
R:
CGCTTAAGACGAGGAAGCCTG
Band lengths:
251-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: