MmuEX0037453 @ mm10
Exon Skipping
Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110815293-110817999:+
Coord C1 exon
chr9:110815293-110815552
Coord A exon
chr9:110816417-110816571
Coord C2 exon
chr9:110817089-110817999
Length
155 bp
Sequences
Splice sites
3' ss Seq
CAAAAATTTTCTCTGTGTAGGTA
3' ss Score
8.3
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACATCTGGATTATGCAGTGTTCATGGGAGATGCTGACTTGTGGTCCAAAAGGCCAGTCAGGATTCCAGTCCAGGACATCATCGTTCACCAGGATTTCTCCATGATGAGAACAGTTGTTCATGACATCGCCCTTGTTCTGCTGGCCTTCCCTGTGAATTACAGCGTCAACATCCAGCCCGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCTGGGACGCTATGCTGGGTGACCGGATGGGGCAAAGTACTTGAACAAG
Seq A exon
GTAGGTCGTCGAGAATACTGCAGGAGATTGAGCTGAATATTATCCGTCATGAGAAATGTAACCAGATTCTCAAGGACATCATGGGGAATATATTTACCCTGGTCCAGGAAGGGGGAGTCTGTGGCTATAATGAGAAAGGAGGAGATGCCTGCCAG
Seq C2 exon
GGAGATTCTGGGGGCCCCCTGGTCTGCGAATTTAATAAAACGTGGGTGCAGGTAGGGATCGTGAGCTGGGGTCTTGGCTGTGGCCGAATTGGATACCCTGGAGTTTATACAGAAGTGAGTTACTACAGAGACTGGATCATTAAAGAACTGAGTCGGGCTTCGTGTTGGAAGCTATCAGGCTTCCTCGTCTTAAGCGTGTGTCTGGTGCTTCACCTGGCCATCGTGGTGGCCCTATGATCCCCACAGCCCATGGTCCTCTTGTTTCTGAGCCTTCACTAGCTTCTCCCCTGACCGGATTTCCCCACCAATGCTTTCTTCAAATTCTACTTGGGATTGCTTGCCTTAGTGGAGCAGGAACACTGGAGGGAGTTTGGGGCTTGTAAGCATGTCCCGCCCTGGTGCTCTTTGTCATCTGCCTCAGATACCACTGTACTAAGGCTGTGCTTTACCTGGAGTGAAGGATTGTGGCCCACTTCCCGATAGAGGACTATCTGGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(69.3=98.8)
A:
PF0008921=Trypsin=FE(22.3=100)
C2:
PF0008921=Trypsin=PD(19.7=57.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACCTGGGACGCTATGC
R:
CGCTTAAGACGAGGAAGCCTG
Band lengths:
251-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types