RnoEX0070365 @ rn6
Exon Skipping
Gene
ENSRNOG00000030073 | Prss44
Description
serine protease 44 [Source:RGD Symbol;Acc:1560940]
Coordinates
chr8:119085258-119088205:+
Coord C1 exon
chr8:119085258-119085517
Coord A exon
chr8:119086658-119086812
Coord C2 exon
chr8:119087294-119088205
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCAAAATGATCTCTGTGTAGGTA
3' ss Score
5.98
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCATCTGGATTACGTAGTGTCGATGGGAGAGGCTGACCTGTGGTCCAGTATGTCAGTGAAGATTCCAGTTCAAGACATCATTGTCCACCAAGATTACTCTGTGATGAGAACAATTGTACACGACATTGCCCTTGTTCTGCTGGCCTTCCCCGTGAATTACAGTGTCAACATCCAGCCTGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCGGGGACCCTATGCTGGGTGACTGGATGGGGCAAAACAATTGAACGAG
Seq A exon
GTAGATCATCAAGGGTGCTTCGGGAGGTTGACCTAAGTATTATTCGTCACGAGAGATGTAATCAGATCCTTAAGGACATCACAGGAAGAATATTTACCCTAGTCCAGGAAGGGGGAGTCTGTGGCTATAATAAGAAAGGAGGAGATGCCTGCCAG
Seq C2 exon
GGAGATTCTGGGGGGCCCATGGTCTGCGAATTTAATAAGACATGGGTGCAGGTAGGGATCGTGAGCTGGGGCCTTGGCTGTGGTCGAATCGGATACCCTGGAATTTATACAGAAGTGAGTTACTACAGAGACTGGATCATTAAGGAACTGAGTCGAGCTTCGTGTTGGAAGTCATTAAGCTTCCTCTTCTTAAGCCTGTGCCTGGTGCTTCACCTGGGCATCCTGGTGACCCCATGATCTCTATACAGCCCATGGTCCTCTTGTTTCTGAGCCTCCACTAGGCTTCTCCTCAGACCTAATTTCCCTGCCAATGCTCTTTCTTCAAATTCTACTTGGGATTTGTGGAGCACAGCAGGGAGTTTGGGGCTTGTAAAATATCCGGCCCTGGTACCCTTTGTCATCTGCCTCAGCTACCACTGTATTAAGTCTGTGCTTTACCTGGAGCGAAGGAGTGTGGACCACTTCCGGGTAGAGGACTACCTGGCCTGCCAGTGGAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030073_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.0=100)
A:
PF0008921=Trypsin=FE(22.3=100)
C2:
PF0008921=Trypsin=PD(19.7=57.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCAGCCTGTGTGCATC
R:
CACGAAGCTCGACTCAGTTCC
Band lengths:
258-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]