MmuEX0037456 @ mm10
Exon Skipping
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:127886950-127887649:-
Coord C1 exon
chr7:127887499-127887649
Coord A exon
chr7:127887177-127887418
Coord C2 exon
chr7:127886950-127887095
Length
242 bp
Sequences
Splice sites
3' ss Seq
AACCCTGCCTCTCAACACAGGCG
3' ss Score
7.35
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CATGTGGCTCCTTGAGGAGTGCAGGACCCCAGGCAGGAGCGCTCTCTCAGTGGCCCTGGGATGCCAGGCTGAAGCACCACGGGAAGCTGGCTTGTGGTGGAGCTCTGGTATCGGAGGTGGTGGTGCTGACGGCTGCTCACTGCTTTATCGG
Seq A exon
GCGCCAAACCCTAGAGGAATGGAGCGTAGGACTGGGGGCTGGACCAGAGGAATGGGGCCTGAAGCAACTCATTCTGCACGGGGCCTACACCCACCCAGAAGGCGGCTATGATGTGGCCTTCCTGCTGCTGGCTCAGCCTGTGACATTGGGCCCTGGCCTAAGGCCCCTCTGCTTGCCCTATGCTGACCACCACCTGCCTGATGGTGAACATGGCTGGGTTCTTGGGCTGACCCAAAAAGCAG
Seq C2 exon
GCATCAACTACCCCCAGACAGTACCTGTGACAGTCCTGGGGCCGATGGCCTGTAGCAGACAGCATGCAGCTCCTGGGGGCACAGGCATCCCCATCCTGCCAGGGATGGTATGCACCACTGTCGTGGGTGAGCCCCCTCACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.6=84.3)
A:
PF0008921=Trypsin=FE(37.0=100)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGAGGAGTGCAGGACC
R:
CTCACAGTGAGGGGGCTCA
Band lengths:
289-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types