RnoEX0070377 @ rn6
Exon Skipping
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199331787-199332895:-
Coord C1 exon
chr1:199332745-199332895
Coord A exon
chr1:199332422-199332663
Coord C2 exon
chr1:199331787-199332336
Length
242 bp
Sequences
Splice sites
3' ss Seq
AACCCTGCCTCTCAACACAGGCG
3' ss Score
7.35
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CATGTGGCTCCTTGAGTAGTGGAGGACCCCAGGCAGGAGCCCTCTCCCAGTGGCCCTGGGATGCCAGACTGAAGCACCATGGGAAGCTGGCTTGTGGTGGAGCCCTGGTATCGGAGGTGGTGGTGCTGACTGCTGCTCACTGCTTTATCGG
Seq A exon
GCGACAAACCCTAGAGGAATGGAGTGTAGGACTGGGGGCTGGACCAGAGGAATGGGGCCTGAAGCAACTCATTCTGCATGGGGCTTACACCCACCCAGAAGGCGGCCATGATGTGGCTTTCCTGCTGCTGGCTCAGCCTGTGACGTTGGGCCCTGGCCTCAGGCCCCTCTGCTTGCCCTATGCTGACCACCGCCTGCCTGACGGGGAACATGGCTGGGTTCTTGGGCTGACCCGAGAAGCAG
Seq C2 exon
GCATCAACCACCCCCATACAGTGCCTGTGACAGTCCTGGGGCCAATGGCCTGTAGCAGACAACATGCAGCTTCTGGTAGCACGGGTGTTCCCATTCTGCCAGGGATGATATGCACCACTGTTGTGGGTGAGCCACCTCACTGTGAGGTGAGTTCCAGTTCCCAATCTTTACTCAGCAGACCCCTGGCATCCTCCCACCCTGAACAGACTCTACCAGGCTTAGCTGCTAGCCCTGCTTCTCACCTGAAACTAAACCCTTCTGTGTCAGCTGGCCCCCAAACCCCTTCTATCTGTGGCAGGAAGTTACCAAGTATAACCTGCTCCTCTCTAACAGGGACTCTCTGGGGCACCACTTGTACATGAGATCAGAGGGACATGGTTCCTGGCTGGACTGCACAGCTTTGGAGACACCTGCCAAGGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTTTCTGCCTATGAGGATTGGGTCAGCAATCTAGACTGGCAGGTCTACTTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040-'13-11,'13-8,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.250
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(24.4=84.3)
A:
PF0008921=Trypsin=FE(46.0=100)
C2:
PF0008921=Trypsin=PD(29.0=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGACTGAAGCACCATG
R:
AGAGTCTGTTCAGGGTGGGAG
Band lengths:
302-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]