MmuEX0038236 @ mm9
Exon Skipping
Gene
ENSMUSG00000091474 | RP23-147O14.2
Description
RIKEN cDNA 2610021A01 gene [Source:MGI Symbol;Acc:MGI:1922662]
Coordinates
chr7:48867741-48880202:+
Coord C1 exon
chr7:48867741-48867867
Coord A exon
chr7:48868526-48868621
Coord C2 exon
chr7:48880093-48880202
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTTCTGATACACAGGCC
3' ss Score
6.51
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTCGGTTAACTTTCAAAGACGTGGCCATAGAATTCTCCCAGGAGGAGTGGGAATGCCTGGACTCTGCTCAGCGGACGTTGTATAGAGATGTCATGTTAGAGATCTACAGCATTCTGGTCTCTGTGG
Seq A exon
GCCTTTCAGTATCAAAATTAGAGCTACTCACCTGTTTTGAACAAAATGAAGAACCCTCCATTGCAGGCATAAAGGAGTTAAAAGGCATAGAACCAG
Seq C2 exon
TCCTGTCTTGCTTTCATAACAAGGAACTGTTCAAAATAGAGAGCAAACAAGAATCTGCCCAGAGAGAAGGACCAGGACAATTTGGAAGTTCCAGGCTTGGAAAGTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091474_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.324
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCCATAGAATTCTCCCA
R:
GGTCCTTCTCTCTGGGCAGAT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: