MmuEX0038806 @ mm10
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:117753422-117756978:+
Coord C1 exon
chr12:117753422-117753476
Coord A exon
chr12:117754696-117754868
Coord C2 exon
chr12:117755963-117756978
Length
173 bp
Sequences
Splice sites
3' ss Seq
GGCCATATTTCTCTCATCAGTCT
3' ss Score
5.36
5' ss Seq
ACGGTGTAT
5' ss Score
1.11
Exon sequences
Seq C1 exon
CACATGATTGCAGACACTGTCCGAACCCTGAGACACTGCAGGACTAACCAGTTTG
Seq A exon
TCTTTGCTTCCAAAGAGATCACCAGATATTCAGCTAATTCTAAAGCCACCATTCTGATCCATCAATGGTCTGTTCCCAGTATGGGGAGGAGGGTCCTACTGGCTTGGCTTGAACCTACCACTCACCGGAAAGACTGCACAGCCCAAAACAAAAGAGAAACTTAGCTGTCCACG
Seq C2 exon
GAAGTGACGTGTCTCCAAAGGAGCAGCAAGAGCTGAAGTCCTATGTCAACCACCTGTATGTCATCGACAGCCAGCAAGCCCTGTTCGAGCTCTCTCACAGGCTGGAGCCTCGAGCCTGAGCTGTGCCAATGCATCTGCCCTGCATCTGCAACTCTTAGAGCAAGCAAAGGCCTCCGTTCAGCATGTTGCTTCCTGTAATAAAAGAGGTTGCTGAGTTTTATCAGCATACCATGAGACAAGTGCAGGAAAGCCAGCCAAAGCACGTTCAGGAAGTGATGTCAGCCACCAGAGGCGAGAGAGCTCCCCCCACTGCTGTCAGGGAGAAGACAGGAGTCAGAGCATCCTTGGAACAGGGTCTTCCTTATGATGACGATTTCATTCCAGTCCAAGTTTCAGCTTATGAGGTGCCAGCATTAGGAGGTGATTGCTCATATAGCAAGAAGGACTGTCACTCTGCCTGGTCACCTTACTGCTGATTGGCTGTCTGCTCACCTTATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'45-54,'45-53,46-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.053 A=0.185 C2=0.077
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000109691fB3353
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGATTGCAGACACTGTCCG
R:
CAACATGCTGAACGGAGGCC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types