MmuEX0038806 @ mm9
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:118991895-118995451:+
Coord C1 exon
chr12:118991895-118991949
Coord A exon
chr12:118993169-118993341
Coord C2 exon
chr12:118994436-118995451
Length
173 bp
Sequences
Splice sites
3' ss Seq
GGCCATATTTCTCTCATCAGTCT
3' ss Score
5.36
5' ss Seq
ACGGTGTAT
5' ss Score
1.11
Exon sequences
Seq C1 exon
CACATGATTGCAGACACTGTCCGAACCCTGAGACACTGCAGGACTAACCAGTTTG
Seq A exon
TCTTTGCTTCCAAAGAGATCACCAGATATTCAGCTAATTCTAAAGCCACCATTCTGATCCATCAATGGTCTGTTCCCAGTATGGGGAGGAGGGTCCTACTGGCTTGGCTTGAACCTACCACTCACCGGAAAGACTGCACAGCCCAAAACAAAAGAGAAACTTAGCTGTCCACG
Seq C2 exon
GAAGTGACGTGTCTCCAAAGGAGCAGCAAGAGCTGAAGTCCTATGTCAACCACCTGTATGTCATCGACAGCCAGCAAGCCCTGTTCGAGCTCTCTCACAGGCTGGAGCCTCGAGCCTGAGCTGTGCCAATGCATCTGCCCTGCATCTGCAACTCTTAGAGCAAGCAAAGGCCTCCGTTCAGCATGTTGCTTCCTGTAATAAAAGAGGTTGCTGAGTTTTATCAGCATACCATGAGACAAGTGCAGGAAAGCCAGCCAAAGCACGTTCAGGAAGTGATGTCAGCCACCAGAGGCGAGAGAGCTCCCCCCACTGCTGTCAGGGAGAAGACAGGAGTCAGAGCATCCTTGGAACAGGGTCTTCCTTATGATGACGATTTCATTCCAGTCCAAGTTTCAGCTTATGAGGTGCCAGCATTAGGAGGTGATTGCTCATATAGCAAGAAGGACTGTCACTCTGCCTGGTCACCTTACTGCTGATTGGCTGTCTGCTCACCTTATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.053 A=0.185 C2=0.077
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGATTGCAGACACTGTCCG
R:
CAACATGCTGAACGGAGGCC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types