MmuEX0038893 @ mm10
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120649316-120652870:+
Coord C1 exon
chr5:120649316-120649534
Coord A exon
chr5:120652567-120652727
Coord C2 exon
chr5:120652814-120652870
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCCACACCTCTCCCCTCCAGCCC
3' ss Score
8.29
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CCCTGCATCCAGCCCACTCGCACCCCAGACCCGGACACGTGGGAACCGGCTGACAGCGTGCTTGGCCCGCAGCTGATGACATGTAGGGTCACCTCCTGGTCCAGCCTCAGAACCTCGGCAGACTCCTTGCCTGGAAAGTTTGGGACTGTGCGACATGGCCAAGAGCGGCTCGCTGAGTATCCGCGTGGTGGAGGGACGAGCACTGCCCGCCAAGGACGT
Seq A exon
CCCCCTCTGGGCTGGTTGGAATCCCGTAGTGACAAAGCAGTCCCAGAACCAGAAGGACCAGGCTTATACTGCCTGTGGGTGAGTGGCCTGGACCGTGGTGACGTAACCTGCTGATATTCCCCCAAGGTCTTGACTCTGTAGAACTTGCTGTGTGACCCAGG
Seq C2 exon
GTCTGGAAGCAGTGACCCCTATTGTCTGGTGAAAGTGGATGACCAAGTGGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602_MULTIEX1-1/8=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.481 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.3=68.2)
A:
NO
C2:
PF0016825=C2=FE(23.2=100)
Main Inclusion Isoform:
ENSMUST00000031606fB3361
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCCCACTCGCAC
R:
CCAGACAATAGGGGTCACTGC
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types