MmuEX0038893 @ mm9
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121099397-121102879:+
Coord C1 exon
chr5:121099397-121099543
Coord A exon
chr5:121102576-121102736
Coord C2 exon
chr5:121102823-121102879
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCCACACCTCTCCCCTCCAGCCC
3' ss Score
8.29
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CTGATGACATGTAGGGTCACCTCCTGGTCCAGCCTCAGAACCTCGGCAGACTCCTTGCCTGGAAAGTTTGGGACTGTGCGACATGGCCAAGAGCGGCTCGCTGAGTATCCGCGTGGTGGAGGGACGAGCACTGCCCGCCAAGGACGT
Seq A exon
CCCCCTCTGGGCTGGTTGGAATCCCGTAGTGACAAAGCAGTCCCAGAACCAGAAGGACCAGGCTTATACTGCCTGTGGGTGAGTGGCCTGGACCGTGGTGACGTAACCTGCTGATATTCCCCCAAGGTCTTGACTCTGTAGAACTTGCTGTGTGACCCAGG
Seq C2 exon
GTCTGGAAGCAGTGACCCCTATTGTCTGGTGAAAGTGGATGACCAAGTGGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.481 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(22.4=68.2)
A:
NO
C2:
PF0016825=C2=FE(23.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACATGTAGGGTCACCTCC
R:
CACTTGGTCATCCACTTTCACCA
Band lengths:
194-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types