MmuEX0039131 @ mm9
Exon Skipping
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:7716104-7720458:-
Coord C1 exon
chrX:7720373-7720458
Coord A exon
chrX:7719953-7720081
Coord C2 exon
chrX:7716104-7718334
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTACCTCTTACTATTCTCAGATA
3' ss Score
7.32
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AAGCCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAAATGTAG
Seq A exon
ATACACAAGGAATAACACTTCTGATCCAGGATCGTCCTTGCAAATTGCTGTATTTATAAAGATTTTTGGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTCCCAAG
Seq C2 exon
GTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTGGGGAACTGGCAGAACCACATGCTGCCCTAAAGGTAGGTCAGGGGTGGGGAGGAAGGAAAGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTTGGATGGTTTTCTAGCTGTGTGTGTATATGTATGTGTATAGCAGCAACAAAGAACAAAAATAGTAGCCTCATATTTCTGTAACAATTGTTCTACTTTCCAGATAGATAACTGGAGGTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAGGGCCCAGGAGGTCCACTGCAAAGCTTTATGGTCATGCAGACATTAGTAAAACTCAAATTTGAGGTCCAAAGCTCCCCAAACACCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167_CASSETTE1
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGACCGCTACTCAGGA
R:
CCTTTAGGGCAGCATGTGGTT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: