MmuEX0039131 @ mm10
Exon Skipping
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:8138975-8143329:-
Coord C1 exon
chrX:8143247-8143329
Coord A exon
chrX:8142827-8142955
Coord C2 exon
chrX:8138975-8141208
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTACCTCTTACTATTCTCAGATA
3' ss Score
7.32
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
CCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAAATGTAG
Seq A exon
ATACACAAGGAATAACACTTCTGATCCAGGATCGTCCTTGCAAATTGCTGTATTTATAAAGATTTTTGGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTCCCAAG
Seq C2 exon
GTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTGGGGAACTGGCAGAACCACATGCTGCCCTAAAGGTAGGTCAGGGGTGGGGAGGAAGGAAAGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTTGGATGGTTTTCTAGCTGTGTGTGTATATGTATGTGTATAGCAGCAACAAAGAACAAAAATAGTAGCCTCATATTTCTGTAACAATTGTTCTACTTTCCAGATAGATAACTGGAGGTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAGGGCCCAGGAGGTCCACTGCAAAGCTTTATGGTCATGCAGACATTAGTAAAACTCAAATTTGAGGTCCAAAGCTCCCCAAACACCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167_CASSETTE1
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGACCGCTACTCAGGA
R:
CCTTTAGGGCAGCATGTGGTT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types