MmuEX0039202 @ mm10
Exon Skipping
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128151183-128179845:-
Coord C1 exon
chr10:128179793-128179845
Coord A exon
chr10:128176350-128176436
Coord C2 exon
chr10:128151183-128151355
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCTCTCTCTCAGCTC
3' ss Score
11.09
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTCAGAGAGGACTCTGTGAACGTCATTTGGCTTGGCCATAAATTCCACACCTG
Seq A exon
CTCCGTAACAGTAAAGAAAAAATGCTGCTATCAGTGACTTCCAGGCCTGGGATTTCGACTTTTGGCTATAACAAGAACAACAAGAAG
Seq C2 exon
CTATATGTGGCTCAGCAAATGGCACCTCCAAGTCCAAGGAATAGCACCCCCAACAGCAGCGGCGGAGGCGGCGGCGGGAGTGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAGGCACCACTGACCAGGACCTTGTCAAGCTCTGTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.715
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(29.9=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGTCATTTGGCTTGGC
R:
TGGCTGCAGTCCTCGGATATA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types