MmuEX0039202 @ mm9
Exon Skipping
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127588239-127616925:-
Coord C1 exon
chr10:127616849-127616925
Coord A exon
chr10:127613406-127613492
Coord C2 exon
chr10:127588239-127588411
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCTCTCTCTCAGCTC
3' ss Score
11.09
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGTTACGATTTGTCTGTTTGACAGCTCAGAGAGGACTCTGTGAACGTCATTTGGCTTGGCCATAAATTCCACACCTG
Seq A exon
CTCCGTAACAGTAAAGAAAAAATGCTGCTATCAGTGACTTCCAGGCCTGGGATTTCGACTTTTGGCTATAACAAGAACAACAAGAAG
Seq C2 exon
CTATATGTGGCTCAGCAAATGGCACCTCCAAGTCCAAGGAATAGCACCCCCAACAGCAGCGGCGGAGGCGGCGGCGGGAGTGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAGGCACCACTGACCAGGACCTTGTCAAGCTCTGTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.706
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(29.9=34.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGTCATTTGGCTTGGC
R:
TGGCTGCAGTCCTCGGATATA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types