MmuEX0039506 @ mm10
Exon Skipping
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82818416-82871210:-
Coord C1 exon
chr11:82870767-82871210
Coord A exon
chr11:82845752-82845895
Coord C2 exon
chr11:82818416-82818603
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACCAAAGCTCCGTCCCCAGGCG
3' ss Score
5.06
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGGCCCACGCCGAGCCGCGGGGGACTGGGTTAGTGGGGGTGGACTTCCTGGGGCCGCCCGTGAGGATGTGGTTCGGGCACCCGGGCGCCCCTCAGGCGTGGAGTTGCGGCGGCCGCAGACCCCGCAGCCCCGCTGCCTGAGTGGCCGCGGTCGGGATCTGGCCTCTGCCGTCCCAGGTGTGGCCCGGCAGCGTCCGCGGCAGGTGAGGAGGCGGTGGCTGTGGCTGTGGCGGGTTGGGCTGGAGGATCCGGTGCTTCAGGCTGTGCTCCGGGGGGTGTGAGGATCCAGCTGCGCTCCGGGAGTGGGGCAGCCCTTTCCAGGAACTCCCCACCGCCAGGTCACCCCACACCTGTCCCATGAAAGTGCCGCAAAGCATTTCGTCTGTGTGCGCCGTAACCCGGGACGTGTGTCCTCAACTTGTACCCAAGTGTCGTAAGAACCCG
Seq A exon
GCGGCACCATTCACTGTCCCTGAGAGCAGCTGCTGCTGGCCCCTGAGATGATCTCATCCGAACATGGCTCCAGCGACCTCAGCCGCAGCTTCTTCGGGCAGCCCACTGTCTGCTGTGGCAGTGTTTTGAGACAGGCAAAAGCAG
Seq C2 exon
ATTTTATCATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGGCACCACCACCACAGGGAGCCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTGCAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696_MULTIEX1-1/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0231811=FYVE_2=PU(29.9=31.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATTTCGTCTGTGTGCG
R:
GTTGTGCTTGCGAAATGGACC
Band lengths:
255-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types