MmuEX0039506 @ mm9
Exon Skipping
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82631918-82684712:-
Coord C1 exon
chr11:82684510-82684712
Coord A exon
chr11:82659254-82659397
Coord C2 exon
chr11:82631918-82632105
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACCAAAGCTCCGTCCCCAGGCG
3' ss Score
5.06
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGGCCCACGCCGAGCCGCGGGGGACTGGGTTAGTGGGGGTGGACTTCCTGGGGCCGCCCGTGAGGATGTGGTTCGGGCACCCGGGCGCCCCTCAGGCGTGGAGTTGCGGCGGCCGCAGACCCCGCAGCCCCGCTGCCTGAGTGGCCGCGGTCGGGATCTGGCCTCTGCCGTCCCAGGTGTGGCCCGGCAGCGTCCGCGGCAG
Seq A exon
GCGGCACCATTCACTGTCCCTGAGAGCAGCTGCTGCTGGCCCCTGAGATGATCTCATCCGAACATGGCTCCAGCGACCTCAGCCGCAGCTTCTTCGGGCAGCCCACTGTCTGCTGTGGCAGTGTTTTGAGACAGGCAAAAGCAG
Seq C2 exon
ATTTTATCATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGGCACCACCACCACAGGGAGCCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTGCAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696_MULTIEX1-1/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.153
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0231811=FYVE_2=PU(31.8=33.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGGATGTGGTTCGGG
R:
GGAATAGGCTTGTGTCCTGGC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types