MmuEX0041092 @ mm9
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:79549002-79568858:-
Coord C1 exon
chr10:79568728-79568858
Coord A exon
chr10:79565355-79565466
Coord C2 exon
chr10:79549002-79549177
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAGGCCGCGCCCCTTCGCAGAAG
3' ss Score
4.14
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGTCTTGGCACAGACTGCAGCCCTAACAGGGGCCTAGCAGGATCTGGCTGTATGTCCTGGGGCAGAGAGCTGGGAGCCCCAGGTCCTGGGACAGTGACCTATAGACACCTGGGGACACCAAGGAGCTACAG
Seq A exon
AAGCGGAAGTGCGCGCCGCCGGCAACATGGCGCCCAGAACCCGGAAGTGAGCGGCGGCCGCTGAGAGGCTCCGGGAAACCGAGGCGTCGCGGGCTCAGCGATCAGGTCTGAG
Seq C2 exon
GATATGACATTACAACTGCCGCTGCCAGCACCACAGAGTAAGCAGTCCAGATAGCCGCCACCCGAGGGTCGCGGAGCGCTGCCTCCACTTGCCTGATGCTGGCAGTGGAACCCACCATGGATGGGGACTTCCCTCCACATGAGCTCCCACCCCCTGGAGGTGGCATCCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.852
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGGGGCCTAGCAGGATC
R:
AGCTCATGTGGAGGGAAGTCC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: