MmuEX0041092 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80086257-80106170:-
Coord C1 exon
chr10:80105983-80106170
Coord A exon
chr10:80102610-80102721
Coord C2 exon
chr10:80086257-80086432
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAGGCCGCGCCCCTTCGCAGAAG
3' ss Score
4.14
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGGAAGGCCTGGGCTGGGTGGATCTCAAACCTGTCAGGCAGGTTAGCTCTTCCCCGAAGTCTTGGCACAGACTGCAGCCCTAACAGGGGCCTAGCAGGATCTGGCTGTATGTCCTGGGGCAGAGAGCTGGGAGCCCCAGGTCCTGGGACAGTGACCTATAGACACCTGGGGACACCAAGGAGCTACAG
Seq A exon
AAGCGGAAGTGCGCGCCGCCGGCAACATGGCGCCCAGAACCCGGAAGTGAGCGGCGGCCGCTGAGAGGCTCCGGGAAACCGAGGCGTCGCGGGCTCAGCGATCAGGTCTGAG
Seq C2 exon
GATATGACATTACAACTGCCGCTGCCAGCACCACAGAGTAAGCAGTCCAGATAGCCGCCACCCGAGGGTCGCGGAGCGCTGCCTCCACTTGCCTGATGCTGGCAGTGGAACCCACCATGGATGGGGACTTCCCTCCACATGAGCTCCCACCCCCTGGAGGTGGCATCCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.852
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGGGGCCTAGCAGGATC
R:
AGCTCATGTGGAGGGAAGTCC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types