MmuEX1023041 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80086257-80106170:-
Coord C1 exon
chr10:80105983-80106170
Coord A exon
chr10:80104202-80104287
Coord C2 exon
chr10:80086257-80086432
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTTCCATGCCTTTCCTTAGGTG
3' ss Score
9.31
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGAAGGCCTGGGCTGGGTGGATCTCAAACCTGTCAGGCAGGTTAGCTCTTCCCCGAAGTCTTGGCACAGACTGCAGCCCTAACAGGGGCCTAGCAGGATCTGGCTGTATGTCCTGGGGCAGAGAGCTGGGAGCCCCAGGTCCTGGGACAGTGACCTATAGACACCTGGGGACACCAAGGAGCTACAG
Seq A exon
GTGACCTGGGACTAATTTCAGGATAGTCCTCTGCCTCCATTTCTTCCCCTGGGGAATGCAGGTGACACATATCTCAGAGGACTAAG
Seq C2 exon
GATATGACATTACAACTGCCGCTGCCAGCACCACAGAGTAAGCAGTCCAGATAGCCGCCACCCGAGGGTCGCGGAGCGCTGCCTCCACTTGCCTGATGCTGGCAGTGGAACCCACCATGGATGGGGACTTCCCTCCACATGAGCTCCCACCCCCTGGAGGTGGCATCCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.852
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACTGCAGCCCTAACAG
R:
CTGCTTACTCTGTGGTGCTGG
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types